STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1942PFAM: Heparinase II/III family protein. (575 aa)    
Predicted Functional Partners:
Swit_1941
PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.843
Swit_1940
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 12; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.775
Swit_4580
PFAM: GcrA cell cycle regulator.
  
     0.719
Swit_4828
PFAM: protein of unknown function DUF490.
 
     0.709
Swit_2541
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.708
Swit_2332
PFAM: heat shock protein DnaJ domain protein.
  
     0.707
Swit_2528
Hypothetical protein.
  
     0.705
Swit_3899
Hypothetical protein.
  
     0.699
Swit_4112
Hypothetical protein.
  
     0.689
Swit_3939
PFAM: Sporulation domain protein.
 
     0.676
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.