STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1965PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (65 aa)    
Predicted Functional Partners:
Swit_1964
PFAM: cytochrome P450.
 
  
 0.824
Swit_2069
PFAM: amidohydrolase 2.
  
     0.735
Swit_0313
PFAM: amidohydrolase 2.
  
     0.692
Swit_4387
Hypothetical protein.
  
     0.682
Swit_1962
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.586
Swit_1963
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.586
Swit_0952
Hypothetical protein.
 
   
 0.548
Swit_3236
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.494
Swit_1966
PFAM: amidohydrolase; Amidohydrolase 3.
       0.483
Swit_0303
PFAM: protein of unknown function DUF227.
  
     0.478
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.