STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_1969PFAM: amidohydrolase 2. (429 aa)    
Predicted Functional Partners:
Swit_1972
Nucleic-acid-binding protein containing a Zn-ribbon-like protein.
 
     0.855
Swit_3654
PFAM: amidohydrolase 2.
  
     0.772
Swit_2029
Hypothetical protein.
 
     0.767
Swit_2018
Hypothetical protein.
  
    0.753
Swit_2009
PFAM: Ethyl tert-butyl ether degradation EthD.
 
     0.747
Swit_1994
Hypothetical protein.
 
     0.746
Swit_1978
Hypothetical protein.
 
    0.723
Swit_2179
Hypothetical protein.
  
     0.718
Swit_2069
PFAM: amidohydrolase 2.
  
     0.715
Swit_1971
Acetyl-CoA acetyltransferase-like protein.
 
   
 0.700
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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