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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2012PFAM: FAD dependent oxidoreductase. (651 aa)    
Predicted Functional Partners:
Swit_2011
PFAM: major facilitator superfamily MFS_1.
 
     0.808
Swit_2010
PFAM: Alpha/beta hydrolase fold-3 domain protein.
  
 0.670
Swit_3839
Hypothetical protein.
    
 
 0.651
Swit_2030
Hypothetical protein.
 
 
 
 0.623
Swit_2013
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
 
     0.593
Swit_1982
PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein.
 
 
 0.576
Swit_2014
PFAM: major facilitator superfamily MFS_1.
 
   
 0.563
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.557
Swit_2018
Hypothetical protein.
  
     0.522
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
  
  
 0.516
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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