STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2012PFAM: FAD dependent oxidoreductase. (651 aa)    
Predicted Functional Partners:
Swit_2011
PFAM: major facilitator superfamily MFS_1.
 
     0.805
Swit_2010
PFAM: Alpha/beta hydrolase fold-3 domain protein.
  
 0.661
Swit_2030
Hypothetical protein.
 
 
 
 0.616
Swit_2013
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
 
     0.582
Swit_1982
PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein.
 
 
 0.579
Swit_2014
PFAM: major facilitator superfamily MFS_1.
 
     0.551
Swit_2029
Hypothetical protein.
  
    0.526
Swit_2018
Hypothetical protein.
  
     0.522
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
  
  
 0.514
Swit_4229
PFAM: alpha/beta hydrolase fold.
 
 
 0.499
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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