STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2014PFAM: major facilitator superfamily MFS_1. (459 aa)    
Predicted Functional Partners:
Swit_2015
PFAM: protein of unknown function DUF35.
 
     0.804
Swit_2013
Dihydroorotase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3.
       0.773
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
     
 0.772
Swit_3033
PFAM: major facilitator superfamily MFS_1.
 
  
 0.741
Swit_2011
PFAM: major facilitator superfamily MFS_1.
 
  
0.553
Swit_2012
PFAM: FAD dependent oxidoreductase.
 
     0.551
Swit_1978
Hypothetical protein.
  
     0.483
Swit_2009
PFAM: Ethyl tert-butyl ether degradation EthD.
  
     0.477
Swit_2029
Hypothetical protein.
  
     0.465
Swit_2344
Hypothetical protein.
  
     0.459
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.