STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2019PFAM: short-chain dehydrogenase/reductase SDR. (291 aa)    
Predicted Functional Partners:
Swit_2021
PFAM: Enoyl-CoA hydratase/isomerase.
  
 0.852
Swit_2020
PFAM: cytochrome P450.
 
 
 0.839
Swit_2022
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase.
 
   
 0.805
Swit_1978
Hypothetical protein.
  
     0.674
Swit_2029
Hypothetical protein.
  
     0.662
Swit_1994
Hypothetical protein.
 
     0.618
Swit_2179
Hypothetical protein.
  
     0.613
Swit_2018
Hypothetical protein.
 
 
 0.569
Swit_1969
PFAM: amidohydrolase 2.
  
    0.542
Swit_1975
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
  
   
 0.521
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.