Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_2034PFAM: Rieske [2Fe-2S] domain protein. (400 aa)    
Predicted Functional Partners:
Swit_1541
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.774
Swit_0837
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.773
Swit_2521
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.773
Swit_2033
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.594
Swit_2035
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
       0.580
Swit_2036
PFAM: Hydantoinase B/oxoprolinase.
       0.557
Swit_2037
Hypothetical protein.
       0.557
Swit_2038
PFAM: isochorismatase hydrolase.
       0.550
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.498
Swit_4281
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.498
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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