STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2038PFAM: isochorismatase hydrolase. (224 aa)    
Predicted Functional Partners:
Swit_0906
PFAM: isochorismatase hydrolase.
 
  
0.926
Swit_4275
PFAM: isochorismatase hydrolase.
 
  
0.917
Swit_1168
Pyrimidine oxygenase; Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein.
  
  
  0.916
Swit_4216
PFAM: luciferase family protein.
  
  
  0.915
Swit_4109
PFAM: flavin reductase domain protein, FMN-binding.
    
  0.902
Swit_4207
PFAM: putative esterase.
  
  
 0.770
Swit_2036
PFAM: Hydantoinase B/oxoprolinase.
       0.763
Swit_2037
Hypothetical protein.
       0.762
Swit_2035
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
       0.732
Swit_3647
PFAM: isochorismatase hydrolase.
 
   
 0.646
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.