STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2053PFAM: Rieske [2Fe-2S] domain protein. (398 aa)    
Predicted Functional Partners:
Swit_1830
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
 
  
 0.929
Swit_1839
3-oxosteroid 1-dehydrogenase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase.
  
  
 0.929
Swit_3358
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
  
 0.928
Swit_1829
PFAM: Rieske [2Fe-2S] domain protein.
  
  
 
0.907
Swit_3307
PFAM: Rieske [2Fe-2S] domain protein.
  
  
 
0.904
Swit_2054
Hypothetical protein.
 
     0.858
Swit_1550
PFAM: Rieske [2Fe-2S] domain protein.
 
     0.765
Swit_1543
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
 
     0.757
Swit_3296
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
   
 0.717
Swit_2071
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit-like protein.
 
   
 0.716
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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