STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2086PFAM: Taurine catabolism dioxygenase TauD/TfdA. (293 aa)    
Predicted Functional Partners:
Swit_2082
PFAM: short-chain dehydrogenase/reductase SDR; KR.
     
 0.706
Swit_2081
Hypothetical protein.
       0.705
Swit_2083
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein.
       0.705
Swit_2084
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase.
       0.705
Swit_2085
Hypothetical protein.
       0.705
Swit_2080
Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase.
       0.681
Swit_2087
PFAM: Amidohydrolase 3.
       0.636
Swit_2508
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3.
 
  
 0.499
Swit_2511
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.490
Swit_2078
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR.
     
 0.473
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.