STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2098PFAM: luciferase family protein. (309 aa)    
Predicted Functional Partners:
Swit_2096
PFAM: short-chain dehydrogenase/reductase SDR; KR.
     
 0.783
Swit_2097
Hypothetical protein.
       0.783
Swit_2102
PFAM: cyclase family protein.
 
     0.764
Swit_0415
Coenzyme F420-0 gamma-glutamyl ligase; TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129.
 
   
 0.757
Swit_0414
LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD.
 
   
 0.752
Swit_0724
Methylenetetrahydromethanopterin reductase; PFAM: luciferase family protein.
  
     0.741
Swit_2100
PFAM: AMP-dependent synthetase and ligase.
     
 0.739
Swit_1675
PFAM: luciferase family protein.
  
     0.738
Swit_2101
PFAM: protein of unknown function DUF35.
     
 0.737
Swit_2099
PFAM: beta-lactamase.
       0.734
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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