Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2106PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR. (233 aa)    
Predicted Functional Partners:
Swit_2105
PFAM: AMP-dependent synthetase and ligase.
  
 
 0.806
Swit_2107
Hypothetical protein.
     
 0.785
Swit_2104
PFAM: luciferase family protein.
     
 0.783
Swit_2108
PFAM: luciferase family protein.
     
 0.783
Swit_3403
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.706
Swit_3289
PFAM: short-chain dehydrogenase/reductase SDR; KR.
  
     0.696
Swit_0579
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
 
 
 
 0.691
Swit_0295
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.610
Swit_2103
Acetyl-CoA acetyltransferase-like protein.
  
 
 0.590
Swit_2096
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
    
0.576
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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