Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2121PFAM: TonB-dependent receptor. (298 aa)    
Predicted Functional Partners:
Swit_4738
PFAM: TonB-dependent receptor.
 
  
 0.739
Swit_1810
PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
 
  
 0.721
Swit_3861
PFAM: TonB-dependent receptor, plug.
  
  
 0.696
Swit_2575
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.656
Swit_3857
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.631
Swit_1809
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.620
Swit_1502
TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
  
     0.619
Swit_1501
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.588
Swit_2336
Hypothetical protein.
  
     0.587
Swit_4737
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.575
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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