Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2128Hypothetical protein. (280 aa)    
Predicted Functional Partners:
Swit_2127
PFAM: peptidase T2, asparaginase 2.
 
     0.833
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.659
Swit_2125
PFAM: protein of unknown function DUF6, transmembrane.
       0.553
Swit_2129
Hypothetical protein.
       0.548
Swit_4654
PFAM: peptidase M48, Ste24p.
  
     0.538
Swit_2124
PFAM: GCN5-related N-acetyltransferase.
  
    0.493
Swit_2707
Hypothetical protein.
  
     0.437
Swit_3567
PFAM: protein of unknown function DUF885.
  
  
 0.431
Swit_2758
SMART: Tetratricopeptide domain protein.
 
    0.428
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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