Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_2155Hypothetical protein. (221 aa)    
Predicted Functional Partners:
Swit_2154
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein.
 
   
 0.821
Swit_2153
Hypothetical protein.
       0.576
Swit_3750
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
     0.532
Swit_4859
TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; Belongs to the PEP-utilizing enzyme family.
     
 0.506
Swit_4000
Uncharacterized protein.
  
     0.501
Swit_0178
TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein.
 
   
 0.460
Swit_0172
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
   
 0.419
Swit_2156
PFAM: luciferase family protein.
       0.416
Swit_0185
PFAM: protein of unknown function DUF736.
  
     0.407
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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