Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_2165Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein. (152 aa)    
Predicted Functional Partners:
Swit_2164
PFAM: Methyltransferase type 11; Methyltransferase type 12.
 
 
   0.964
Swit_0051
Cysteine desulfurase; PFAM: aminotransferase, class V.
  
  
 0.565
Swit_0052
PFAM: aminotransferase, class V.
  
  
 0.565
Swit_2166
Hypothetical protein.
       0.493
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
  
 0.452
Swit_1002
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein.
 
  
 0.406
Swit_2822
PFAM: GCN5-related N-acetyltransferase.
 
 
 0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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