STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2181Hypothetical protein. (236 aa)    
Predicted Functional Partners:
Swit_2193
PFAM: phage terminase GpA.
 
     0.795
Swit_1524
Hypothetical protein.
 
     0.778
Swit_2179
Hypothetical protein.
 
     0.767
Swit_2191
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda.
 
     0.753
Swit_2189
Hypothetical protein.
 
     0.690
Swit_1994
Hypothetical protein.
  
     0.645
Swit_2196
TIGRFAM: phage/plasmid primase, P4 family; PFAM: Phage/plasmid primase, P4-like; Bifunctional DNA primase/polymerase-like.
  
     0.620
Swit_2029
Hypothetical protein.
  
     0.596
Swit_2180
Hypothetical protein.
       0.594
Swit_2344
Hypothetical protein.
  
     0.592
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.