Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2230PFAM: phosphate-selective porin O and P. (458 aa)    
Predicted Functional Partners:
Swit_3191
TIGRFAM: filamentous haemagglutinin family outer membrane protein.
 
    0.534
Swit_1303
PFAM: thioesterase superfamily protein.
  
     0.530
Swit_3190
PFAM: Polypeptide-transport-associated domain protein, ShlB-type.
 
  
 0.478
Swit_2783
Hypothetical protein.
 
     0.464
Swit_3775
PFAM: Rhodanese domain protein.
  
  
 0.458
Swit_2934
Membrane-like protein.
  
     0.457
Swit_2153
Hypothetical protein.
  
     0.452
Swit_2229
Hypothetical protein.
       0.450
Swit_3174
PFAM: Protein of unknown function DUF1971.
  
     0.421
Swit_0226
Hypothetical protein.
  
     0.407
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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