STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2239PFAM: Rieske [2Fe-2S] domain protein. (350 aa)    
Predicted Functional Partners:
Swit_2238
Hypothetical protein.
       0.762
Swit_2240
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.762
Swit_2237
PFAM: AMP-dependent synthetase and ligase.
  
  
 0.528
Swit_2241
TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase.
     
 0.490
Swit_2242
PFAM: major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.477
Swit_2243
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related.
       0.477
Swit_2244
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR.
       0.471
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.