STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2256PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (159 aa)    
Predicted Functional Partners:
Swit_2257
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 
 0.890
Swit_2274
Uncharacterized protein.
 
   
 0.687
Swit_2258
PFAM: short-chain dehydrogenase/reductase SDR; KR.
 
 
 0.684
Swit_2018
Hypothetical protein.
 
   
 0.669
Swit_2029
Hypothetical protein.
  
    0.668
Swit_1978
Hypothetical protein.
 
     0.658
Swit_2280
Hypothetical protein.
 
     0.626
Swit_1431
Hypothetical protein.
  
    0.624
Swit_1994
Hypothetical protein.
  
     0.624
Swit_3095
Hypothetical protein.
 
     0.613
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.