Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2263Hypothetical protein. (185 aa)    
Predicted Functional Partners:
Swit_3320
PFAM: MaoC domain protein dehydratase.
 
     0.723
Swit_3318
PFAM: protein of unknown function DUF35.
  
     0.721
Swit_2076
PFAM: dihydrodipicolinate reductase.
 
     0.717
Swit_1853
Hypothetical protein.
  
     0.698
Swit_2015
PFAM: protein of unknown function DUF35.
  
     0.689
Swit_2262
Hypothetical protein.
 
   
 0.660
Swit_3321
Acetyl-CoA acetyltransferase-like protein.
 
     0.601
Swit_3654
PFAM: amidohydrolase 2.
  
     0.545
Swit_2030
Hypothetical protein.
 
   
 0.531
Swit_2016
Acetyl-CoA acetyltransferase-like protein.
 
     0.520
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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