Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Swit_2283Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein. (440 aa)    
Predicted Functional Partners:
Swit_2284
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.830
Swit_2508
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3.
 
  
 0.770
Swit_2285
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
       0.655
Swit_2511
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 0.595
Swit_2098
PFAM: luciferase family protein.
  
     0.539
Swit_0704
PFAM: luciferase family protein.
  
     0.537
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.473
Swit_2286
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.455
Swit_2381
PFAM: nitroreductase.
 
  
 0.452
Swit_1712
PFAM: cysteine dioxygenase type I.
 
    0.443
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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