STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2284PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (202 aa)    
Predicted Functional Partners:
Swit_2283
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein.
 
    0.830
Swit_1679
Hypothetical protein.
 
     0.770
Swit_0303
PFAM: protein of unknown function DUF227.
  
   
 0.712
Swit_0329
PFAM: protein of unknown function DUF227.
  
   
 0.712
Swit_2285
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
  
 0.704
Swit_0811
Hypothetical protein.
  
     0.623
Swit_2298
PFAM: monooxygenase, FAD-binding.
 
   
 0.608
Swit_2018
Hypothetical protein.
  
   
 0.591
Swit_3045
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.580
Swit_3331
PFAM: Ethyl tert-butyl ether degradation EthD.
  
     0.579
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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