STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2285Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein. (367 aa)    
Predicted Functional Partners:
Swit_2284
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.697
Swit_2283
Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase-like protein.
       0.655
Swit_2286
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.533
Swit_1875
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.526
Swit_3265
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein.
 
  
 0.505
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_0889
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_0895
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.465
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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