STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2289PFAM: beta-lactamase domain protein. (320 aa)    
Predicted Functional Partners:
Swit_2290
Hypothetical protein.
       0.667
Swit_0775
PFAM: beta-lactamase domain protein.
  
     0.657
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.655
Swit_2288
PFAM: Endoribonuclease L-PSP.
  
    0.633
Swit_2287
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
     
 0.617
Swit_0943
PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
  
 0.479
Swit_2292
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.438
Swit_0776
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.436
Swit_3526
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.432
Swit_0369
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.427
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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