STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2333Transcriptional regulator BolA; PFAM: BolA family protein; Belongs to the BolA/IbaG family. (102 aa)    
Predicted Functional Partners:
Swit_4712
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
  
 
 0.851
Swit_2332
PFAM: heat shock protein DnaJ domain protein.
 
 
 
 0.832
Swit_2334
PFAM: protein of unknown function DUF1328.
       0.587
Swit_4229
PFAM: alpha/beta hydrolase fold.
   
   0.580
Swit_2331
Hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5.
       0.545
Swit_4570
PFAM: Pirin domain protein domain protein; Pirin domain protein; Belongs to the pirin family.
       0.529
Swit_0560
PFAM: Methyltransferase type 11; Methyltransferase type 12.
  
     0.523
Swit_2712
PFAM: ATP12 ATPase.
 
    0.474
Swit_3914
PFAM: protein of unknown function DUF455.
  
     0.472
Swit_2329
TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit.
       0.465
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.