Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_2334PFAM: protein of unknown function DUF1328. (60 aa)    
Predicted Functional Partners:
Swit_2333
Transcriptional regulator BolA; PFAM: BolA family protein; Belongs to the BolA/IbaG family.
       0.585
Swit_2335
Hypothetical protein.
       0.576
Swit_2433
PFAM: AsmA family protein.
 
    0.536
Swit_3571
Hypothetical protein.
  
    0.484
Swit_3430
Uncharacterized protein.
  
    0.471
Swit_3470
PFAM: ErfK/YbiS/YcfS/YnhG family protein.
 
     0.462
Swit_2332
PFAM: heat shock protein DnaJ domain protein.
       0.444
Swit_4525
PFAM: glycosyl transferase, family 2.
  
  
 0.431
Swit_2453
PFAM: Capsule polysaccharide biosynthesis protein.
  
    0.428
Swit_3494
PFAM: polysaccharide export protein.
  
    0.428
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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