Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2341Cytochrome c peroxidase-like protein. (451 aa)    
Predicted Functional Partners:
Swit_3251
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
   
   0.681
Swit_4365
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
   
   0.681
Swit_2340
TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein.
       0.502
Swit_2495
Hypothetical protein.
 
   
 0.419
Swit_0690
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein.
  
 
 0.412
Swit_3254
PFAM: methylamine dehydrogenase heavy subunit.
  
 
 0.412
Swit_4363
PFAM: methylamine dehydrogenase heavy subunit.
  
 
 0.412
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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