Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2368TIGRFAM: Methanolan biosynthesis EpsI. (248 aa)    
Predicted Functional Partners:
Swit_2367
TIGRFAM: eight transmembrane protein EpsH.
 
     0.968
Swit_2167
Hypothetical protein.
 
     0.772
Swit_2370
Hypothetical protein.
 
     0.746
Swit_2366
Hypothetical protein.
       0.529
Swit_3440
Multi-sensor signal transduction histidine kinase; TIGRFAM: PEP-CTERM system histidine kinase, putative; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein.
  
     0.430
Swit_2407
PFAM: lipopolysaccharide biosynthesis protein.
 
     0.410
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
     0.410
Swit_4031
PFAM: polysaccharide export protein.
 
     0.407
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.