Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2373PFAM: glycosyl transferase, family 2. (329 aa)    
Predicted Functional Partners:
Swit_2374
PFAM: glycosyl transferase, family 2.
 
   
 0.904
Swit_2371
PFAM: sugar transferase.
  
  
 0.834
Swit_3184
PFAM: glycosyl transferase, group 1.
  
 0.821
Swit_2377
PFAM: polysaccharide biosynthesis protein.
 
  
 0.805
Swit_4473
PFAM: glycosyl transferase, family 2.
 
   
 0.786
Swit_2375
Hypothetical protein.
 
   
 0.765
Swit_2935
Hypothetical protein.
 
   
 0.654
Swit_2372
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein.
 
   
 0.638
Swit_0848
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
 
  
 0.578
Swit_2407
PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.540
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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