Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2375Hypothetical protein. (517 aa)    
Predicted Functional Partners:
Swit_3663
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE.
  
 
 0.831
Swit_2373
PFAM: glycosyl transferase, family 2.
 
   
 0.765
Swit_3184
PFAM: glycosyl transferase, group 1.
 
  
 0.730
Swit_2377
PFAM: polysaccharide biosynthesis protein.
 
   
 0.723
Swit_2679
PFAM: protein of unknown function DUF1508.
   
 
 0.713
Swit_4473
PFAM: glycosyl transferase, family 2.
 
   
 0.694
Swit_2376
PFAM: glycosyl transferase, group 1.
 
  
 0.659
Swit_3835
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.618
Swit_3670
Hypothetical protein.
  
 
 0.594
Swit_4552
PFAM: glycoside hydrolase, family 16; Hemolysin-type calcium-binding region.
  
 
 0.590
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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