STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2376PFAM: glycosyl transferase, group 1. (353 aa)    
Predicted Functional Partners:
Swit_2375
Hypothetical protein.
 
  
 0.659
Swit_2648
PFAM: glycosyl transferase, group 1.
  
     0.624
Swit_2645
PFAM: glycosyl transferase, group 1.
  
     0.590
Swit_4527
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
 
  
 0.577
Swit_2377
PFAM: polysaccharide biosynthesis protein.
 
  
 0.563
Swit_2371
PFAM: sugar transferase.
 
  
 0.501
Swit_4534
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like.
 
  
 0.499
Swit_4001
PFAM: glycosyl transferase, family 2.
  
  
 0.491
Swit_0143
PFAM: polysaccharide biosynthesis protein.
 
  
 0.490
Swit_4473
PFAM: glycosyl transferase, family 2.
 
  
 0.463
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.