Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_2379Hypothetical protein. (501 aa)    
Predicted Functional Partners:
Swit_2380
PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU-like.
       0.560
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
  
 0.545
Swit_2381
PFAM: nitroreductase.
     
 0.499
Swit_2371
PFAM: sugar transferase.
  
  
 0.480
Swit_2382
PFAM: peptidase M22, glycoprotease.
       0.476
Swit_2383
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
       0.476
Swit_2377
PFAM: polysaccharide biosynthesis protein.
  
  
 0.410
Swit_4527
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein.
  
  
 0.410
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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