STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2406ATPase involved in chromosome partitioning-like protein. (261 aa)    
Predicted Functional Partners:
Swit_2407
PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.955
Swit_4031
PFAM: polysaccharide export protein.
 
 
 0.822
Swit_2371
PFAM: sugar transferase.
 
  
 0.818
Swit_2408
PFAM: polysaccharide export protein.
 
 
 0.805
Swit_3439
PFAM: sugar transferase.
 
  
 0.804
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.773
Swit_4816
PFAM: polysaccharide export protein.
 
 
 0.755
Swit_2640
PFAM: sugar transferase.
 
  
 0.725
Swit_2642
PFAM: sugar transferase.
 
  
 0.713
Swit_4813
PFAM: sugar transferase.
 
  
 0.712
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.