STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2407PFAM: lipopolysaccharide biosynthesis protein. (601 aa)    
Predicted Functional Partners:
Swit_2406
ATPase involved in chromosome partitioning-like protein.
 
  
 0.955
Swit_4031
PFAM: polysaccharide export protein.
 
 
 0.909
Swit_2408
PFAM: polysaccharide export protein.
 
 
 0.899
Swit_3571
Hypothetical protein.
 
 
 0.868
Swit_4816
PFAM: polysaccharide export protein.
 
 
 0.854
Swit_4033
ATPase involved in chromosome partitioning-like protein.
 
  
 0.828
Swit_4531
PFAM: polysaccharide export protein.
 
 
 0.808
Swit_4037
Hypothetical protein.
 
     0.786
Swit_4038
PFAM: glycosyl transferase, group 1.
 
  
 0.786
Swit_4036
TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: polysaccharide deacetylase.
 
   
 0.785
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.