Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2415PFAM: ornithine cyclodeaminase/mu-crystallin. (322 aa)    
Predicted Functional Partners:
Swit_2416
PFAM: amidohydrolase; Amidohydrolase 3.
     
 0.787
Swit_2418
PFAM: amino acid permease-associated region.
     
 0.785
Swit_2417
PFAM: peptidase S10, serine carboxypeptidase.
       0.781
Swit_1590
PFAM: ornithine cyclodeaminase/mu-crystallin.
  
     0.761
Swit_2414
PFAM: peptidase S10, serine carboxypeptidase.
       0.733
Swit_2419
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II.
 
   
 0.662
Swit_1051
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
  
 0.643
Swit_2413
PFAM: regulatory protein, AsnC/Lrp family.
     
 0.464
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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