Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_2433PFAM: AsmA family protein. (710 aa)    
Predicted Functional Partners:
rpmI
PFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.731
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.723
Swit_2752
Hypothetical protein.
  
     0.580
Swit_4705
PFAM: acid phosphatase (Class B).
 
     0.579
Swit_2159
PFAM: protein of unknown function DUF1428.
   
    0.573
Swit_1811
PFAM: polysaccharide deacetylase.
  
    0.568
Swit_2334
PFAM: protein of unknown function DUF1328.
 
    0.536
Swit_3818
PFAM: 4-oxalocrotonate tautomerase.
 
     0.523
Swit_3710
PFAM: outer membrane efflux protein.
  
  
 0.520
Swit_4340
PFAM: protein of unknown function DUF466.
  
     0.501
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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