Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swit_2447PFAM: NADH:flavin oxidoreductase/NADH oxidase. (351 aa)    
Predicted Functional Partners:
Swit_3360
PFAM: NADH:flavin oxidoreductase/NADH oxidase.
  
  
 
0.907
Swit_2448
PFAM: protein of unknown function DUF6, transmembrane.
       0.755
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
       0.755
Swit_2451
TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein.
     
 0.532
Swit_2450
PFAM: FeoA family protein.
       0.529
Swit_3196
PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like.
  
 
 0.410
Swit_2452
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
       0.409
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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