Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2450PFAM: FeoA family protein. (88 aa)    
Predicted Functional Partners:
Swit_2451
TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein.
 
  
 0.994
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
 
   
 0.814
Swit_2448
PFAM: protein of unknown function DUF6, transmembrane.
       0.776
Swit_2452
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
     
 0.714
Swit_2745
ABC-type uncharacterized transport system auxiliary component-like protein.
  
     0.688
Swit_0407
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.684
Swit_0105
PFAM: peptidase M61 domain protein.
 
     0.666
Swit_2707
Hypothetical protein.
  
     0.648
Swit_4782
PFAM: PDZ/DHR/GLGF domain protein; peptidase M61 domain protein.
 
     0.639
Swit_4828
PFAM: protein of unknown function DUF490.
 
     0.636
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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