STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2453PFAM: Capsule polysaccharide biosynthesis protein. (513 aa)    
Predicted Functional Partners:
Swit_2454
PFAM: Capsule polysaccharide biosynthesis protein.
   
 0.983
Swit_4015
PFAM: ABC-2 type transporter.
 
  
 0.961
Swit_4014
Capsule polysaccharide export-like protein.
 
  
 0.959
Swit_3493
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.957
Swit_3494
PFAM: polysaccharide export protein.
 
  
 0.895
Swit_4016
PFAM: glycosyl transferase, group 1.
  
 0.838
Swit_3963
PFAM: Phytanoyl-CoA dioxygenase.
 
     0.714
Swit_4560
Hypothetical protein.
 
     0.687
Swit_3964
PFAM: acylneuraminate cytidylyltransferase.
 
     0.672
Swit_4477
TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.
 
   
 0.606
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.