Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_2453PFAM: Capsule polysaccharide biosynthesis protein. (513 aa)    
Predicted Functional Partners:
Swit_2454
PFAM: Capsule polysaccharide biosynthesis protein.
   
 0.985
Swit_4015
PFAM: ABC-2 type transporter.
 
  
 0.973
Swit_4014
Capsule polysaccharide export-like protein.
 
  
 0.960
Swit_3493
PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.955
Swit_3494
PFAM: polysaccharide export protein.
 
  
 0.911
Swit_4016
PFAM: glycosyl transferase, group 1.
    0.828
Swit_4560
Hypothetical protein.
 
     0.686
Swit_3963
PFAM: Phytanoyl-CoA dioxygenase.
 
     0.684
Swit_3964
PFAM: acylneuraminate cytidylyltransferase.
 
   
 0.663
Swit_2408
PFAM: polysaccharide export protein.
  
  
 0.617
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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