Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2472Hypothetical protein. (126 aa)    
Predicted Functional Partners:
Swit_1556
Hypothetical protein.
 
     0.764
Swit_2473
Hypothetical protein.
       0.714
Swit_3016
Hypothetical protein.
 
     0.690
Swit_2309
Hypothetical protein.
  
     0.679
Swit_3581
Hypothetical protein.
  
     0.595
Swit_2471
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.465
Swit_2470
PFAM: major facilitator superfamily MFS_1.
       0.452
Swit_2474
PFAM: protein of unknown function DUF839.
       0.433
Swit_1896
PFAM: Xylose isomerase domain protein TIM barrel.
 
     0.420
Swit_2469
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.418
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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