Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_2477PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (681 aa)    
Predicted Functional Partners:
Swit_4025
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.630
Swit_3561
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.619
Swit_2476
PFAM: protein of unknown function DUF461.
       0.615
Swit_2475
PFAM: electron transport protein SCO1/SenC.
       0.604
Swit_4737
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.604
Swit_1078
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.600
Swit_0922
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.597
Swit_1809
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.594
Swit_1501
anti-FecI sigma factor, FecR; PFAM: FecR protein.
 
 
 0.592
Swit_1821
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.585
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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