Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2479PFAM: Domain of unknown function DUF1905. (104 aa)    
Predicted Functional Partners:
Swit_2748
Hypothetical protein.
  
     0.586
Swit_2478
Hypothetical protein.
       0.562
Swit_2480
PFAM: protein of unknown function DUF969.
       0.502
Swit_2481
PFAM: protein of unknown function DUF979.
       0.502
Swit_1125
PFAM: protein of unknown function DUF6, transmembrane.
  
     0.438
Swit_1903
Uncharacterized protein.
  
     0.417
Swit_4396
PFAM: GCN5-related N-acetyltransferase.
  
     0.412
Swit_0261
PFAM: toxic anion resistance family protein.
 
     0.402
Swit_2477
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.401
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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