Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_2502PFAM: Rieske [2Fe-2S] domain protein. (332 aa)    
Predicted Functional Partners:
Swit_1542
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.771
Swit_4861
PFAM: Rieske [2Fe-2S] domain protein.
  
     0.770
Swit_3413
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
  
     0.766
Swit_2501
Hypothetical protein.
       0.693
Swit_2499
PFAM: Endoribonuclease L-PSP.
  
    0.602
Swit_2498
PFAM: FAD dependent oxidoreductase.
       0.564
Swit_2500
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.564
Swit_2503
PFAM: regulatory protein, AsnC/Lrp family.
       0.506
Swit_1532
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.496
Swit_1757
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
 
 0.496
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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