Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_2503PFAM: regulatory protein, AsnC/Lrp family. (173 aa)    
Predicted Functional Partners:
Swit_3333
PFAM: regulatory protein, AsnC/Lrp family.
  
     0.752
Swit_2504
Hypothetical protein.
       0.682
Swit_2505
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid. Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family.
       0.682
Swit_2502
PFAM: Rieske [2Fe-2S] domain protein.
       0.506
Swit_2501
Hypothetical protein.
       0.473
Swit_1050
PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein.
  
     0.419
Swit_2498
PFAM: FAD dependent oxidoreductase.
  
    0.406
Swit_2500
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.400
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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