STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2575PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (897 aa)    
Predicted Functional Partners:
Swit_2574
Hypothetical protein.
 
    0.902
Swit_3861
PFAM: TonB-dependent receptor, plug.
  
     0.720
Swit_2336
Hypothetical protein.
  
     0.691
Swit_2153
Hypothetical protein.
  
     0.671
Swit_3181
Sigma-70, region 4 type 2; PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2.
  
     0.660
Swit_2121
PFAM: TonB-dependent receptor.
  
  
 0.656
Swit_1502
TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
  
  
 0.632
Swit_0531
3-phytase; PFAM: phytase.
 
     0.611
Swit_1810
PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug.
 
  
 0.590
Swit_2116
Hypothetical protein.
  
     0.577
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.