STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2586PFAM: General secretion pathway L. (362 aa)    
Predicted Functional Partners:
Swit_2584
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.984
Swit_2585
PFAM: General secretion pathway M protein.
  
 
 0.977
Swit_2589
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J.
 
  
 0.943
Swit_2590
PFAM: PDZ/DHR/GLGF domain protein.
 
   
 0.928
Swit_2583
PFAM: type II secretion system protein.
 
  
 0.877
Swit_2591
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein.
 
  
 0.873
Swit_2587
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
  
 0.869
Swit_2580
Hypothetical protein.
 
   
 0.842
Swit_2588
TIGRFAM: general secretion pathway protein H.
 
  
 0.836
Swit_2579
Type II secretory pathway component PulK-like protein.
 
  
 0.699
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.