Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Swit_2632Hypothetical protein. (84 aa)    
Predicted Functional Partners:
Swit_3781
PFAM: binding-protein-dependent transport systems inner membrane component.
  
 
 0.953
Swit_2631
PFAM: PilT protein domain protein.
 
     0.950
Swit_3852
PFAM: extracellular solute-binding protein, family 5.
  
 
 0.888
Swit_2627
PFAM: carbon starvation protein CstA.
  
  
 0.608
Swit_2629
PFAM: sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
     
 0.608
Swit_2630
PFAM: Endoribonuclease L-PSP.
       0.596
Swit_2628
PFAM: protein of unknown function DUF466.
       0.580
Swit_2623
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
  
  
 0.514
Swit_2625
SMART: extracellular solute-binding protein, family 3.
  
  
 0.485
Swit_3853
4-phytase; PFAM: extracellular solute-binding protein, family 5.
  
  
 0.481
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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