Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_2672PFAM: glycosyl transferase, family 2. (316 aa)    
Predicted Functional Partners:
Swit_4525
PFAM: glycosyl transferase, family 2.
 
 
 0.788
Swit_4009
PFAM: glycosyl transferase, group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
 
 0.744
Swit_2671
PFAM: glycosyl transferase, group 1.
 
   
 0.695
Swit_4543
PFAM: glycosyl transferase, family 2.
 
   
 0.605
Swit_2673
PFAM: protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
       0.578
Swit_2848
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase.
 
 
 0.562
Swit_3439
PFAM: sugar transferase.
 
   
 0.562
Swit_2371
PFAM: sugar transferase.
 
  
 0.514
Swit_4001
PFAM: glycosyl transferase, family 2.
 
 
0.504
Swit_2670
Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
   
   0.487
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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