STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_2679PFAM: protein of unknown function DUF1508. (58 aa)    
Predicted Functional Partners:
Swit_2422
PFAM: Transglycosylase-associated protein.
 
  
 0.582
Swit_2680
TIGRFAM: Double-strand break repair protein AddB.
       0.562
Swit_2681
TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
       0.559
Swit_4749
PFAM: Transglycosylase-associated protein.
  
  
 0.502
Swit_4572
PFAM: isochorismatase hydrolase.
   
  
 0.500
Swit_3222
Response regulator receiver protein; PFAM: LytTr DNA-binding region.
  
    0.475
Swit_3610
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase, family 20.
   
  
 0.472
Swit_2682
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.
       0.455
Swit_3888
Hypothetical protein.
 
    0.407
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.